VAT for Amazon Sellers in the Czech Republic 2026: FBA & OSS Compliance

Do you sell goods via Amazon? Do you use an Amazon FBA warehouse in the Czech Republic? Or is your stock simply stored or shipped from Czech territory? If so, you are required to register for VAT in the Czech Republic specifically as an e-commerce seller.

At YourTaxes.cz, we provide a tailor-made VAT registration service and ongoing reporting for Amazon sellers, ensuring your account remains compliant with both Czech law and Amazon's strict policies.

Why Amazon FBA Sellers Need Czech VAT Registration

Many sellers mistakenly believe that the OSS (One-Stop-Shop) scheme replaces local registration. However, storing goods in a Czech warehouse (FBA) triggers an immediate VAT registration obligation with no turnover threshold. This is required to report internal stock movements and local B2C sales.

Fulfillment Type	VAT Registration in CZ
Amazon FBA (Stock in CZ)	Mandatory before the first sale
Amazon Merchant Fulfilled (from abroad)	Optional / OSS dependent
Other Marketplaces (Zalando, AboutYou)	Mandatory if stock is stored in CZ

Efficient Reporting with AccountOne & Amainvoice

We understand that Amazon sellers deal with thousands of transactions. To ensure 100% accuracy, we prepare your Czech VAT returns by integrating with your existing e-commerce data or professional tax tools such as:

• Taxdoo (which closes its business at the end of March 2026)
• Amainvoice
• AccountOne
• Direct Amazon Selling Partner API reports

Our process is highly automated and flexible, allowing us to provide premium services at very competitive prices.

VAT Compliance, Returns and Intrastat

Beyond the initial VAT registration in the Czech Republic, we handle all recurring obligations:

• VAT returns & Control Statements: Filed exclusively in the mandatory XML structure.
• Authorized Agent: In 2026, foreign entities need a reliable partner for electronic communication with the Czech Tax Office. We act as your authorized representative.
• INTRASTAT Reporting: We monitor your thresholds (currently CZK 15 million) and file Intrastat reports when necessary.
• EC Sales Lists: For B2B intra-Community supplies.
• De-Registration: If you decide to stop using the Czech Amazon FBA we can easily cancel your VAT registration in the Czech Republic.
• Change of registration: Amazon has started to require sellers to ensure that the information shown in their Amazon seller profile matches their VAT registration details. Otherwise, sellers risk having their accounts blocked.

Note for OSS users: Transactions declared in the Czech Republic before the registration to OSS or movements of goods between EU warehouses must still be reported via local Czech VAT returns.

Why Work With YourTaxes.cz?

Our extensive experience with cross-border e-commerce allows us to handle the entire process remotely. You simply send us your reports, and we take care of the rest via power of attorney.

• Communication in English & German: We speak your language.
• Direct Representation: We communicate directly with the tax authorities on your behalf.
• Transparent Pricing: No hidden fees for your e-commerce growth.
• Many years of experience: We have been working with Amazon seller representation since 2017, and we have extensive experience and the trust of hundreds of sellers.

---

FAQ: Amazon VAT in the Czech Republic

What documents are needed for Czech VAT registration of the Amazon seller?

We will provide you with a special list of required documents (e.g., Extract from the Trade Register, VAT certificate from your home country, your Amazon-Profile, eventually your first Amazon report). We handle the submission and follow-ups with the tax office.

Can I file my own VAT returns for Amazon FBA?

While possible, the Czech Tax Office requires specific XML formats and communication via the Data Box system, which is extremely difficult for foreign entities without a local authorized agent.

Do you want to secure your Amazon account and ensure full compliance? Contact us today for an individual offer tailor-made for Amazon sellers.

Author: Ing. Ondřej Antoš, LL.M., tax advisor specialized in e-commerce and international VAT compliance.